Scaffold Ga0114968_10012690

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10012690
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6005
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F043284	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001269011	F043284	AGG	MKLLSVINKLNETRDKAIELVGRTISLASDAGEIISVARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLSSGDADPSLMRQTYLRIGILPDPITMSEPSEPKHFLFPIMKARQWLASRGAKFIAQDKALKEQF
Ga0114968_100126904	F016963	AGGA	MIEILPEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIERIRSGL*
Ga0114968_100126905	F005502	AGGAG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK*
Ga0114968_100126908	F007747	AGGAGG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKKLHAFGLKQLKKDPEAVIEYVIVKALGAFAKK*