NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10012032

Scaffold Ga0114968_10012032


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10012032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6184
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035216Metagenome172Y
F047567Metagenome / Metatranscriptome149N
F050981Metagenome / Metatranscriptome144N
F078382Metagenome / Metatranscriptome116N
F094923Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100120321F050981N/AQVAGVPTMRWLAIICLSASSVCAQITDDELSKISKEEIVLTIKHLRALTADAIATADRAIASEARMQSKLVDATNALMDSQKQLLKVDQDIRNLQAQADEQTRIAVGAKADAVKAQRLADHRGNLLGWLGAGLLCILCLRLTSVLPAPYGFLLPVAAIPAGYWLARLLL*
Ga0114968_1001203210F035216N/AMIITTTYIILSSIIATGAFAVGRAQRRENRRLGKMACEAHIPHRLETPVSEIAKVRMELELALLQLESERLESERLRSIIRETIR*
Ga0114968_1001203211F094923GAGMSDHDPDLVARANRTMRAIRTMIRIVLTTAIIGLLWLLWRYWL*
Ga0114968_1001203216F047567N/AMICSLEKTHATKREATAMLALIVEKITETTWMAATVHRVHMDPHELYEVVKVGKRWHIRATAQHLKAAKALRPKG
Ga0114968_100120322F078382N/AMSFRNALRQTLALIVVVLSIFLSRTFWVTIGGLYVVWIVHWSDVATLYTLDNAAQLQAFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDKLNPKDS*
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