Scaffold Ga0114968_10011714

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10011714
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6271
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001171414	F027756	GGAG	MKLKDLIDRKILFINFPINRHAIQEGKISEISPAEKCMKINNDWHLVSNIRIIELFSKDERPSLGFN*
Ga0114968_1001171418	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMEYDGKRNY*
Ga0114968_1001171420	F034827	AGGAG	MKYVISSQDKEAMIDFDKLKEGEVFSFFDPESVQRGNHSIYMKIRVPNFTGANIVDLDDGKAYSFSDKKRNTINDPDEKQGNKVYKLNAKINIIII*
Ga0114968_1001171421	F048123	N/A	MKPRYDFTKGKMISYDGEIIEFAGSSKIDKYEDQIEEIMSLFNLKKGEYLVTDESKISDFGKDTINILRLAKFKKKYKFSVMNKDFLYKIAERMYSYRPF*
Ga0114968_1001171423	F104482	N/A	MKKIKKWKKEVTSEEFEKEMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR*
Ga0114968_100117145	F049419	AGG	MKLPKFDYLNLATTYILFGLIYGVIVAVVWNYLFEPISNIHLSILQGFGIHLMTRILFGNTNTNYISNFYTPKVPDLDKIDTYLKEMQEDLDKQADEVERQYEDLDKKD*