Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10005401 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10005401 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9486
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (86.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9486

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (86.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003422	Metagenome / Metatranscriptome	487	Y
F004840	Metagenome / Metatranscriptome	421	Y
F017133	Metagenome / Metatranscriptome	242	Y
F063685	Metagenome / Metatranscriptome	129	Y
F093873	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000540116	F004840	N/A	MYKITCAYDSNAPHWSAEYENEFGAWENFFLFIDWGFADEYSTVNLYTPTGKCYTKVFYRNGMVAVK*
Ga0114968_1000540123	F017133	AGGA	MNSMFEKFATVSDYPRGLMNLCPCGQVVLAPAKYHAGFAWWENPNKCKELFEGVK*
Ga0114968_1000540125	F063685	GGA	MKIELDSFGFMFNTEWAYVSLSWELLIASVLLGVAYKFYKIRKAK*
Ga0114968_1000540129	F093873	AGGA	MFSLNYTVGLSSSTCLVPSEEYANEFLDLVAKTRVIDTVTLTELPNYKPSKRVVFATTRSWE*
Ga0114968_100054014	F003422	AGG	MYICRQCPQGCGCDIDHTGRIKNPLEKLVNVSGSWYNSSMTNELISSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRKTTLVSVEHATIQPTTQTKEEPMETETPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQANMYVSKIDTVKDIITEAYADSDDQETLRSIAEALDIELTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10005401

Overview

Ecosystem & Geography

Associated Families

Sequences