Scaffold Ga0114968_10005400

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10005400
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9486
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F023059	Metagenome	211	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F045612	Metagenome	152	Y
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000540012	F093768	N/A	MPLLPQSVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQVNYTAQGAVINAVTQ*
Ga0114968_1000540015	F012113	N/A	MNTLLSFVQTQDLFAWLGALTALLTAAIAVCALIPGDEPEATLTKIVSFLSKFSRK*
Ga0114968_1000540016	F023059	AGGA	MWEAVLASLAGLIGIIAWWTKNRAKTRKERDDEEIAYNRRLRDAEVDSWIHRN*
Ga0114968_100054002	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTVAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSETSDGLRSLNFFQTQNSMYVAVI*
Ga0114968_100054004	F045612	GAG	MTHQYTYEDFMSSLKWLEAEGYIEKFYDNNGDLCVRVCEGAEDCEI*
Ga0114968_100054005	F012433	GAGG	MSADQVADLRERLARIEERQTNIISILERHTSELAQWSSKINSKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKMRVFSR*
Ga0114968_100054006	F006138	GAGG	MAAVTIGTAGLSFGLVSEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS*
Ga0114968_100054007	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEVGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRSVAVRVVQTKGGQTLLISENATSEQRRAILKHL*
Ga0114968_100054008	F019102	N/A	MSISLEEELNSAFVAPDKEYMSEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKSRKEAIKLAWNRDLFREKIMDFIDGKTEADRDAATNIVSNMIEEASKGRVEIIPTPNSPDLGNA*
Ga0114968_100054009	F025225	GAG	MMSIELLNHDKFVLRLQQYQDASRKNMARVINDKLGDVAVTAIGTTYRTNTAKIASEIQRVEGQIVTRKVFKPFGLTKSGKVKKRKIGEYAFGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKEGVGGLGMGGGKPGTIGALARRLVAGRKRSINYIRNGWAAAAAVFGKRAKLTRGDYSEEAIKRLGGGTKAESDKARMEGMIFNRAGDLDTRYYPVRKRAISGAVAVGKPGLEEAVEKVMADMAVYLARKNKESSDKLKL*