Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10002102 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10002102 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15367
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (81.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15367

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (81.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002935	Metagenome	519	Y
F017133	Metagenome / Metatranscriptome	242	Y
F021109	Metagenome	220	Y
F026557	Metagenome / Metatranscriptome	197	Y
F034573	Metagenome	174	Y
F063707	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000210214	F026557	AGG	MINSVMTIPCEECHSTGLIFFGDNDNFDTETCECDFGIEQDLYFFNNNN*
Ga0114968_100021022	F021109	AGG	MNTLNRIQTEQTIARHEAHEKAMTQSPWIRESVQAYRTSTPEQLAQVEAILRKRGQIK*
Ga0114968_1000210230	F002935	AGGA	MRERTTGYIGNILDGKKLAKIANKIYKAQYNSVSECTIDNLLLIELEEKNVFGDSKYAVVCTEGVGWEQDSYGCLEIPTNVGAMGNWNGRVFISVEVIGQCLTGQTQDISKYIRTFGDRLDNNCYLWQCKMSVLPSTISV*
Ga0114968_1000210231	F001507	N/A	MTQTTFKPYTIHELVDEIYNDNYSHLEFMDNMGGDCDCVIHTTMQTILEYWGE*
Ga0114968_1000210236	F063707	AGTAGG	MPKCLDCNNTTRFWYQELGNKLGIYNEDGTLDDVEDDYYDEVEGGTCAECESANIEGKL*
Ga0114968_1000210240	F034573	GAGG	MYKITRNNVATNEEKIAKKISVLLSDFTIDLEKVGYYLARATPYLLFCRSLEVLESAQFQKDTIEQQRIGYDNDRLFY*
Ga0114968_100021028	F017133	GGCGG	MSIWTRLATVNDYPKGMMNLCPCGQVVLAPALYHEGQSYMTNPNKCKELFEGENK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10002102

Overview

Ecosystem & Geography

Associated Families

Sequences