NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10001932

Scaffold Ga0114968_10001932


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10001932 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15951
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (84.85%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F025466Metagenome / Metatranscriptome201Y
F054668Metagenome / Metatranscriptome139Y
F058137Metagenome135Y
F096878Metagenome / Metatranscriptome104N
F101146Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000193211F020909GAGMITKRGKKVRAIAIAVGIILIWQIAMNLWWVGIDAPNAEFLGWCWGSMSECVVL*
Ga0114968_1000193212F058137N/AMVGKKIRSVRVSEQVWAKAKAKAQSEGKSVSEVIVDFLKGYIK*
Ga0114968_1000193219F025466AGGAMMFDKVKFEAIVMTYLRAGIASVLALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK*
Ga0114968_1000193222F054668AGGAGMGISTRQVTVTTAATALVDATTEAEMVYLHSSSGTCFVGNSDVTSSTGYKMDNGDKITIENKANGIWAITNSGTVTMQVLAIGK*
Ga0114968_1000193232F101146AGGAGMAYTVISDREVCGKKKGESITDKELVDAGVSAEALIAANHIKTSNAVSPSIKPATEGVTN
Ga0114968_100019325F024097GGAGLANPNGRKGALFETSVMKWLREHGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE*
Ga0114968_100019326F096878AGGTGGLINRDPLFSVHNALNGDVVIYLEERDANCDLVEDILTQVPMGSIQAINALIGLDLKSIESARLMDKARSAVPELAIKLASVSESEALTLAEQLITAVKYARAMRSQPLATKLELVK*
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