Scaffold Ga0114968_10000455

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000455
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30576
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (38.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F020649	Metagenome / Metatranscriptome	222	Y
F028084	Metagenome / Metatranscriptome	192	Y
F091423	Metagenome / Metatranscriptome	107	N
F093196	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000045518	F009669	N/A	MKAMLSKIFGPNWRSSTSGVTTVIAITTAIAIHSDPTLVAFLPDIAEVYIIGISKLIAVVSGIVFALTVKDAAVTGGTVAQTIEAEKRTGENI*
Ga0114968_1000045519	F014229	GGAG	MNKLQLAAVALLSVFLGACATTQTGKIDAPASVENALPYIKPAVILACTVVLDQATSGNDRIEKAKMINHVAVIVESLTLGSAPTPDQLQKALTDYLPVEKTHWVNYVSAIKDMYAVQFARVDGNGALAIKVLNAIASGCKDATASYVE*
Ga0114968_1000045520	F091423	GAG	MPTGIIQALLSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSGIENAVKDKDLEEARKHISS*
Ga0114968_1000045521	F010817	AGGA	LKKLASILALNFLFIGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFLGDDALITRQARERYNNLIKMYRIKFKKEKAIDLNEDSGIKPYKDTFGNELFLIDSEHLVYFGVLNSWLKEKVAQDNILDKTIDKINN*
Ga0114968_1000045524	F028084	N/A	MKKLLLILPLFLLISCSEPNLDSRELPTKYPETPTMGSADDISKELYKK*
Ga0114968_100004553	F093196	N/A	MNKIPFIVGVCIAISIFYTVYSPHASLVKQQIDNYGMDFEYVTDEGSCFTQRAEPIGHDSHKYVLSLGKSAKPTNAEEPLYVMVGYTMKQIRLKNKSNVFQTPIYKTL*
Ga0114968_100004555	F020649	N/A	MLLKIKNWWANLKSYDKFFFITFVPAILFTLWGLSDLYINYFDLLSREDHLQFFLRFAFPISLATLITVLERNKRKKLIKDIKTYLDE*