Scaffold Ga0114968_10000421

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000421
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31472
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F015062	Metagenome	257	Y
F016499	Metagenome / Metatranscriptome	246	Y
F036080	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000042115	F015062	N/A	MRTKTKHKINAVAPRLSDEDIDPIEQDDSENVTIPSNDGWLPWDPEDISDIRRLVTESMPEKQRLIIESFLDGLSYADIYVTEKYWRYHFVKGIEFLKKELKV*
Ga0114968_1000042118	F036080	N/A	MNDRIDLESAVMLMWQTSDDIELLYKHHGDAPKPMTEDEVATALLGIKALHSLRCAALEDMYSRKFELDQYCTDPEKLAARDDWFDKVLNEARTKTKGKKK*
Ga0114968_1000042124	F016499	GGA	MAKKFKFNEDLAKVILELGQQGASQKAMYAAINISKDTAAKLKKEDPLFAETMSLATTYGQAFWENMMLANIDNKTFNSRVAEISLRGQYPDDYRERMDIKQDIKQEVKIDFNKEVAELIAALKT*
Ga0114968_1000042126	F012096	AGGA	MSTWLIAAMGLVYLVVAIDQFIKGGVGTGIMFLGYAIGNVGLVIVAK*