Scaffold Ga0114968_10000324

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000324
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35272
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (79.17%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002071	Metagenome / Metatranscriptome	596	Y
F010085	Metagenome / Metatranscriptome	308	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038669	Metagenome / Metatranscriptome	165	Y
F071228	Metagenome / Metatranscriptome	122	N
F084217	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000032424	F038669	AGG	MNNILEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLLDTSQFVGQLQDNPEYKYLSGRMDTLTEIYIMTYNLAFAINERTVSRG*
Ga0114968_1000032429	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLGKLADAVIKARPRWNDGSYATRIAISQMVADEWNMETGWGLYINEIGDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMNNDAIFTMDLSVFCEKYAMENILVV*
Ga0114968_1000032433	F071228	AGGA	MLDNLETSMSVPHEYNSNLLVTYKKIAGTYAAPEAPEYITQKVVDLEWALEQGRRADDLYNGLKLKVNELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTVTGTIAFEVTVQVPLDEIDNFDAHYKLGDELSLTSYGSEVEVNDWSIEDTNVDWD*
Ga0114968_1000032439	F002071	AGGA	MEIGTTYTTTTSGITGVIKAIDNHPSGVNRILLDVNGTERWTSVKA*
Ga0114968_1000032445	F024549	N/A	MYRLDTYYDGELEYTHKFADALQAFEAFAKCYDVGFANEFATYNLSLPNGKMYTKNFNRIGLVSQK*
Ga0114968_1000032446	F038205	AGGA	MGNLAEIIGVACDECGGAGFIFWGDENNYDVESCDCALEMWGI*
Ga0114968_1000032447	F000447	AGG	MGYIEIFRLDEQGAGWVDLSEATPDELLNLEIGLFNEGAL*
Ga0114968_100003245	F001280	GAGG	MCFECGCESVGSETGIVSAPITDVSRDGEAGLTLNMTSTPEQTRQFINE*
Ga0114968_1000032454	F084217	AGGA	MNDYLNYLDEVYDDLVSEYGEGITLAYHVANEKEM*
Ga0114968_100003246	F001176	N/A	MSENGTGMATPPNNEPAGAVTSQEVGRKKPNQGKFRSGINGPRPATKVDTNKHGIRRETNLGPKKTGRPKKV*
Ga0114968_1000032462	F010085	AGGAG	LRQIQYVSQYIALSEESLVPKLECPMDQGSLFCNLDLEDNIFLYCISCDYKNFIGSSFYDNIVLLVDGVKNV*