Scaffold Ga0114968_10000035

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000035
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122003
• Total Scaffold Genes: 197
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 114 (57.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F007163	Metagenome / Metatranscriptome	356	Y
F009137	Metagenome / Metatranscriptome	322	Y
F009605	Metagenome / Metatranscriptome	315	Y
F011754	Metagenome / Metatranscriptome	287	Y
F035192	Metagenome / Metatranscriptome	172	Y
F042301	Metagenome / Metatranscriptome	158	Y
F064668	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_10000035112	F035192	AGGAG	MSKQEDTLHKAYGNMPKEVGYSGNWDFIPTWRGVKYYWYKLIRKVTR*
Ga0114968_10000035144	F004256	GAGG	VLDFEYYYNNVPGESPSRNNLIYTSLISKDKKTFCQWYHNDSEYHQGKNQVVDPLLMQEKWLREVNYLTQMRNAFPDLVPKIINIELDKQRLFLEIEGPDFWEQAGCNKANFDKVLPDWQEQMLDIIRAHKSLGLHKYSMHPSSYFVVDGRLKSINYFFTYRTTEPWVTIQDVESHIHSNRQAEMRKHLDRLGIEWNTPQPWEVMDQLCWESFRTNYPEDFIERVKECIK*
Ga0114968_10000035170	F009137	N/A	MSDVLDEFCKNYEVRVLNDQKIRARYNPVRFFTDPCRADIIHKDTVAHETERVYTVEIPEGRLRTLVEMERKFFNYVRHHDKPIDLFQTLMDKEREEANYRHTNQAVQKAYEQYSIMLNLAGYQRKI*
Ga0114968_100000354	F009605	AGGAG	MKKVLNAIWLFLVAFGEARYAASLARQGRVAEAKAVYGA*
Ga0114968_1000003571	F007163	GGAG	MTIEDLEYIFEYQVEEGTTKLYFMLVDQGKMPIIERHPSNNLAGLLPMLSSFEYAGSDAGMPRFVK*
Ga0114968_1000003572	F064668	N/A	MKITVYSRNRLYETFSKWDVPRDFADPMANYLVYGYEPGSCFTSLLANDFFAAMQHSHPANTVEAFKCLVGWINDCMPPDAYSSYNRVSEWIHLDEDSRRAILEKYQLIFTEQEEVMLALRDESTIEPILY*
Ga0114968_1000003585	F011754	N/A	MKIGFSLGRCVRDIVKGNVSINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDEAACQSVALDLWKTNKILQPRRQGLHRHRQPENAVWVDMFPTVISDNHSVKTAWDAYRLMIHMVENVDTDALETFK*
Ga0114968_1000003586	F042301	AGGAG	MVKEGSKWTGGDDKFHVIHVIELEGHTWVHYIKENVQDHELNREYSCYLESFLQRFRPISE*