NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10183924

Scaffold Ga0114963_10183924


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10183924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1219
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074545Metagenome / Metatranscriptome119Y
F096882Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0114963_101839241F074545AGGAGMSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEEK
Ga0114963_101839243F096882AGGAVANNQRSVKESIRAWRTFEDALKNLESFEACAKWVIDNPQICKKLSGTGLMAVMKEDLKKKLD*

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