Scaffold Ga0114963_10026803

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10026803
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3814
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011918	Metagenome / Metatranscriptome	285	Y
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1002680310	F039993	N/A	MKIALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSNLDDKGVIWKDVK*
Ga0114963_1002680312	F039994	GGA	MDNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVARALFAWMQLKKGLPRL*
Ga0114963_1002680313	F011918	N/A	YKYASENPKCACVSVVLAANDPETLVIHRWSEDELYESGIAFQAMLKVWAWSKKYNPPGMKL*
Ga0114963_100268032	F098923	N/A	MYYEEIDRRHVKALENILAEGKCEPGRLIGEDAGHLAYIMNQMFYDKFHGHGWELDLLTGRFVRTTGE*
Ga0114963_100268036	F057984	GGA	MRINDSNHSVSGGLSILALGPREKGKINMDGLGKIQILAERKVEMVELDIEVDDKTRDTVCHAALREITSDGDALFNYGFNKAIKRFIETKGKKCTKKSSSKKRSRR*
Ga0114963_100268037	F091592	GGA	MISAQFTRGDQDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKSQIGKLSDCNCYRDIKEVRSLVRDVKNGTVLFWCKVAGVRIDQSTLNRVIKRGVGNVN*
Ga0114963_100268038	F102824	GGA	MTSVRVQREDEKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGKAQDAADLWNAYALWCKERSGKRKRR*