Scaffold Ga0114963_10004631

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10004631
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9453
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000463115	F083677	GAG	MSHHLDNFTVDELQSYFSDFHKDYYGFRPRFATPEQWQNRDWLVEHINAIHDAMDELKKTPEGREQLRAEGWVIDEPYIDIED*
Ga0114963_1000463119	F006060	AGGAG	MLKFEGIAKVGDIIRAYDFRPMAGRDDAFIEGVVIDDNNNEQGFKAFKVKVTADKFLKYETKATKNNRIGLDIFVPHETGFMEFDFRVINLSKV*
Ga0114963_1000463121	F068426	GGAG	MSKWDFVVSELKSLQQGFEDHQAITELFVEQKLLCGYKIVDKKVYKA*
Ga0114963_100046316	F083691	AGG	MMGISAYKEVTEWNNPEFRVPQNVYLFDGKSNALAYVKESGGEIFIFKKPLPIDTRRRKFIKVKHEALDSYGATVVLDVPNLENTPHWSVKSDSGKTYTVTLESGRYTCNCIGFAYRGACKHSKQIKEEQEK*