Scaffold Ga0114980_10058061

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10058061
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2338
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F008741	Metagenome	328	Y
F086724	Metagenome / Metatranscriptome	110	N
F103229	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100580611	F086724	GGA	MASIEREVENALLNVVSGITGVNFFTSERETARTMPSVTVQASISGEELVPFSGLFKTPASITYVARADTTARADFDAKFYDILEQL
Ga0114980_100580613	F008741	GAGG	VAKTIKYSQRLGDVLRCLPACKYLVDQGHEVFFDCFPQYHSVFDLVSYVKAGSKGDVLDLEIWPNKYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAVGLPETYNLVAAFGNSQGFYRNPLELITKARNDLGKDNFYVMTPPEIRIQGLSTYTAPSVSEMAKAIRGAKDFWAINSTPIVLASVVRRSKPTAFFPQKNEWETDNIFYFEGMFRMD*
Ga0114980_100580615	F003049	N/A	MKNAKQIIGCRKAKKGEDTRGLGMIKFGKSRPCKTKYVKVDITYDNKAKKELYEAGMLALQHDPEAVIEYVIKKALCELVKK*
Ga0114980_100580616	F103229	N/A	MFCPEYQESDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKAIYEKRKANNWM*