Scaffold Ga0114980_10014719

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10014719
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4948
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014118	Metagenome / Metatranscriptome	265	Y
F039511	Metagenome / Metatranscriptome	163	Y
F040097	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001471912	F040097	GAG	MKKEARVEFGITITKPWSKEMYAHNEDVAEVVKETVHQMWVDALKEAIEDYRDEDELGNLYSEMDWGQASDEMVRIQKAITYYSYCNQSIEEVADEVEETLEDMPLFQLKELVEELEIKLDKGFIGFN*
Ga0114980_100147193	F039511	GAG	MKREMKPLEAKIKALREAMELFDIFQQDDEVGSALAEVEAELDKFKFK*
Ga0114980_100147197	F014118	GAG	MASVKKNSAFYQQDAVMGKLSSEARRPREVNAIVRAAMEQGVANRIYLAKREAEAKLNPPRIYFRY*