Scaffold Ga0114980_10008172

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10008172
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6824
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F039497	Metagenome / Metatranscriptome	163	N
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N
F078229	Metagenome / Metatranscriptome	116	Y
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000817210	F104482	N/A	MTSEEFEKAMKAEGRLISKVCYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR*
Ga0114980_1000817212	F032536	GGA	MSKRQSLEELMQDFRFHKNPILNWAFGQSNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYYSLANRHHLIIDDKIVPYVPKEDDFVFNTTLGCHIDKTSGLEISLNQKEYEYVLDEIIFALQMIVNEEDSEVGLEELYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD*
Ga0114980_1000817213	F062447	AGAAGG	MKHKIFWEKNSRVKGIVPQEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWNGSNYTFAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVREILNKI*
Ga0114980_1000817214	F024040	GAGG	MNIYVTGHNWLAKVDIDSQKIDKSNWYNEACTRAVESVLDQEEKEGVDLKIQDYEDFGLGVILLTWDEKNSKNEDDHIVLLTSNILANAGRWEEYRFVKDYEEKAKEEGL*
Ga0114980_1000817216	F104483	GGAG	MNKKIIDKIDLVIEDITYLQELIDFDTTDSSEYDLDSVINLLAEIRGRVSTQEEEVEKIDLKQL*
Ga0114980_1000817220	F039497	AGCAGG	MNEEDNFHCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNANTEGDEDEI*
Ga0114980_1000817221	F082149	AGG	MKLGLHIDWCIGRWFGRDNNLEIRVTLPTISLGYKKEDDDKWFGFKFNLRTDISFESYEYGKIFTLILFGFGVKVSRFNL*
Ga0114980_100081723	F027756	GAG	MKLKDLIDRKILYLNFPINKYAIQEGKVTEISPAEKCIKINNDWHLISNIRIIELFSEKERPALGFN*
Ga0114980_100081726	F030670	N/A	MKIIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWIENDGKNN*
Ga0114980_100081727	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQGWSIYKAPLVKTIKVKTFKKLKDADAFLDNYENN*
Ga0114980_100081729	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNKTNISKIAERMYNFRPF*