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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009152 Open in IMG/M |
| Scaffold ID | Ga0114980_10004509 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9380 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (61.54%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004517 | Metagenome / Metatranscriptome | 434 | Y |
| F011648 | Metagenome / Metatranscriptome | 288 | Y |
| F017467 | Metagenome | 240 | Y |
| F040482 | Metagenome / Metatranscriptome | 161 | N |
| F041563 | Metagenome | 159 | Y |
| F053781 | Metagenome | 140 | Y |
| F065407 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114980_1000450911 | F065407 | GGAG | MFTFDEQYKKFEELNERTKEAYKFWFNVITSSWEDFFKPKKK* |
| Ga0114980_1000450914 | F053781 | N/A | MSKLKLTEEFLILKLFCKMYEDAMHRKDYTQMLELSVDIAESAEKLEQMTVDHINGH* |
| Ga0114980_1000450917 | F017467 | AGAAG | LKNNSDDYLAWWYIGVAKKRGWPEVVRLLAQYPEKENRIKQLIKKKLGK* |
| Ga0114980_1000450921 | F041563 | N/A | MKIQIKILKENKDGSANAEVNFDKEGLEVLVQWGMVSLLTKAIDEYKIEPDEAEASVQPKKKKVKK* |
| Ga0114980_1000450922 | F040482 | N/A | MTWNLRLVNMCSPYEDYFEIREVFYDTMGKPIGHTKAAIGGEDRLEVDRYIELAKLALDKPILKFANNEDTNKDS* |
| Ga0114980_1000450925 | F011648 | AGGAG | MSEQDQDFHSFQQHLERIFKDLEDGVFITADEIGDLRYACGLPSPIRNTHVNPVLRDVINDIGNCFGNPLNTFPTMWSKK* |
| Ga0114980_100045093 | F004517 | AGGA | MVKMIPPTPMSRKYKKEDAMLRPHVESTLEKNQRERLERRAAIADKLKDLDKEVK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |