NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10002755

Scaffold Ga0114980_10002755


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10002755 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12244
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F003379Metagenome / Metatranscriptome490Y
F007263Metagenome / Metatranscriptome354Y
F029434Metagenome / Metatranscriptome188Y
F030095Metagenome / Metatranscriptome186N
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000275514F003379AGGAMKKLWLAISTIAIAILSGSLLAKFTKWAGQEEIFDFDLNEDIDEELSAL*
Ga0114980_1000275528F030095AGGVAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLHNHMAKLQVRDTQGGKKLAFTLTEQDGLTISPVEGKIQISISADRTNKMFFPKSAYDLVLIDPSVNKTRLLEGYMTLNRSVTV*
Ga0114980_100027553F076101GAGGMYKITLSYDNNAPHWQGDYYDEMEAWSAFFKFTDWGFADEFSTVNIYTPELKCYTKVFYRSGMVVAK*
Ga0114980_100027554F029434GGAGMNKYTFGVWLDIDAEDENQALSLFDSVVKNTFVSDSYCFEWKEVANV*
Ga0114980_100027557F007263AGGMIKEYLDENEFYFILDEMKLHCDEIQFVYVCKAHGEQMGCYYCEFDYDKECECEN*
Ga0114980_100027559F001562GGGGGMSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEEE*
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