Scaffold Ga0114980_10001843

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001843
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15111
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (46.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F013525	Metagenome / Metatranscriptome	270	Y
F018712	Metagenome / Metatranscriptome	233	Y
F024771	Metagenome	204	N
F031868	Metagenome	181	N
F032656	Metagenome / Metatranscriptome	179	Y
F040475	Metagenome	161	N
F050330	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000184311	F050330	AGGA	MANETTSSTLSKLYTNKTKVKGTYRVYKPKPLKQTKKK*
Ga0114980_1000184315	F040475	AGAAG	VPHNKVCLAVIRSITNKSYNEIGKHYKKSWFSIYASVKDCQKNGLKAFTNKVIALVKEDIK*
Ga0114980_1000184329	F031868	N/A	MEKTMRTVKQEIERLFLESKKHPHIVQTYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQQWKETWIEKN*
Ga0114980_100018433	F018712	N/A	VKQMCERKKPKMLDRKMRGSHDLEIRLYDLMKQADFNQEEIQRLNLIIKKLEEDLEKHLRSTN*
Ga0114980_1000184333	F010247	AGGAG	MNVQGTVKYVFDNRLGKDGSPNKFPNYKFKINENEIVLWSAIRPAFLEKGRNISVTCQASKKNGSLFVMTREDKSPMIQELPSNSSAEAKPDVSFNVDDFETESFNTAVTTIQREMGSSQVAPKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFNN*
Ga0114980_1000184335	F013525	AGG	MTDLSLKNPDEIKQELDTCSEELAHALYEFRRCEEFKKITFSQIALTYKLDKNCSVAESEKYAYCDNNYKIIIEGLLVAEKQYSIARGKYSNLQSWVDLYRSWLVTQRDLSK*
Ga0114980_1000184336	F024771	GAG	MNEKKYINNFNHQSYEVRSKNYKNISEDRFEHYCIDRGYCFTKLSLNSVTSSQSFADSVIPMFSKLPLIYKSQADYFIYKSKEEHEKSDNKEKCQWFVELKNATYEHGKTLAKIKVRDLKRYIYFEQGYTNQYTRFTICFPLNDKIIFKSVDQILKALPKAELKKFPNDNIEYFEIQLS*
Ga0114980_1000184337	F032656	N/A	MNFYLVTYAVSFVKVKSENFKEEVTHVRFFDTDNFANACSFLSSLKKVKKLRITGVEWELEECSWFDYYDDVSNTIN*