Scaffold Ga0114980_10001456

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001456
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16950
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F093500	Metagenome	106	N
F100671	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100014564	F093500	GGA	MTDEEIDAFENYDQRAEATLAYRLMEHLAFKGLITDIEVSNLRYPPCELIIDAEAAWDE*
Ga0114980_100014565	F100671	N/A	MDVTMTDKIKYRMDPKTGRPLHLLGDLAAVLNDDGSTVTEHYDENGRLYKTTAKTVPYPEDWKPA*
Ga0114980_100014566	F009516	GAG	MFYPMGTLEIGDVGTMPATDKGAAKRTSRNVSQYGIRNGKAFKCRTVGGVTFITRWM*
Ga0114980_100014567	F014495	GGA	MIKIPQQAAPLGRKHRVSSDSAWPLRDLNGKTWAERRKEKEQGK*