Scaffold Ga0114980_10000736

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000736
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23328
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F016143	Metagenome	249	Y
F027399	Metagenome	194	Y
F029048	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000073620	F027399	GGA	MNFTFTWILDKFGFQPKIETFDLPVKKPAAKKPAAKKTVAKKTVRKKA*
Ga0114980_1000073625	F016143	GGAG	MDNDYIYTPTGTDITVRWKLTGWIPPSEQQEYLNKWKYYQELPLRKLDDQAKKEYEMVMKKAKVMRIR*
Ga0114980_1000073632	F029048	AGGAG	MLGHIKDVIGDKCRVINENFNVDEERQLIAFEANDLATIIKDVIQTCADCCLNDTDREAILELLN*
Ga0114980_1000073635	F006255	GGA	MSQLNQLMLEHEEFLESALDDMEFGGELSQEQVDCIRQACGKPKRNVVLKELFNDFGAIFGGAK*