Scaffold Ga0114980_10000403

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000403
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31360
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (65.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017133	Metagenome / Metatranscriptome	242	Y
F027847	Metagenome / Metatranscriptome	193	Y
F080127	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100004032	F017133	AGGAG	MSIWTKFATVNDYPTGLMNLCPCGQVVLAPAKYHEGFAWWDNPNKCKELFEGVTK*
Ga0114980_1000040333	F080127	GGA	MNSNYPPMVESTSRSPQPHRFFERFLGNDLNKLSADLQDRYTKIQNAEIIGVTPVGENEIWKQSNSVSTMKWRQYNVFQFHSKELYSLYKAIGDMTKEACDYYGVDFNANQYMLQGWFNITNKGKGKLDWHDHGPEGAPNFHGYYCVKAAPSTTHYRVFNKNVENVNIDNRAILSEMGHPHAMADWDWEGPRITVAYDVIPLRDLITHGMGQEQHWIPLS*
Ga0114980_100004035	F027847	AGGA	MNPFTAVIDWIDENGDFGAPIGAFIGVGIAIALCFIFGGN*