Scaffold Ga0114980_10000289

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000289
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35560
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (71.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F048668	Metagenome	148	Y
F102622	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000028914	F048668	GGA	MRYFRSTPAVYASICAQLDAAYGYPNAETKTERALPLVSDLPADAQGRVYLAISAAYCDYILPSEMLPRLLASGAVEEVAAAVYEALLPAV*
Ga0114980_1000028923	F034165	AGGAGG	VAITLGKDVTITGLTGARSVSVTNSAAEVDVTKFGDTARKFKKAMIEQTVEVECVDDPGIAAGATFTLGGSSTGNTIEFIVTSVARSEPIDGIATYTVSASRAAVQT*
Ga0114980_1000028952	F102622	GGAGG	MPRTWNAAIHSLLCIRLGQELGTSSELAQTIAHSIDFVLGTLARFLG*