Scaffold Ga0114980_10000097

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000097
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56583
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (37.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F020649	Metagenome / Metatranscriptome	222	Y
F028084	Metagenome / Metatranscriptome	192	Y
F032162	Metagenome / Metatranscriptome	180	N
F034466	Metagenome / Metatranscriptome	174	Y
F043789	Metagenome / Metatranscriptome	155	Y
F047507	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000009732	F028084	N/A	MKKLILILPLFLLISCSEPNYESRELPTKYPETPTMGSADDVTKELYKK*
Ga0114980_1000009737	F010817	N/A	VTPNKIEDDKSSYDASTPKQYQKDNSGLISFVGDDALITSQARERYNNLISMYKIKFKKEKAIELKIDSGIKPYKDNFNNELYIIDSEHLVYFGVLNSWLKEKVPADNILDKTIDKINN*
Ga0114980_1000009739	F014229	GGAG	MNKLQLTAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPEQLQKALNDYLPSEKTHWANYVTVIKDLYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE*
Ga0114980_1000009740	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDKAEIYILGIAKLIAVVSGIVFALTVKDAAVTGGTVAQTSEAKDRTNGENI*
Ga0114980_1000009753	F020649	N/A	MASKIKNWWGNLKTYDKFFFITFIPAILFTLWGLSDLYINYFDLLSKEDHLQFFLRFAFPISLATLITVLERNKRRKLIKDIKTYLDE*
Ga0114980_1000009757	F034466	N/A	MDNQLRNLLLDNYEKSLPSKRDTEDFISNFHQYRAKKKAQEKTHYGLVFACILVLTMIGSIVAKQTKNNLDIQTAAGLEKCNTQLMEKK*
Ga0114980_1000009759	F047507	N/A	MINKLNKFWNWKSKTILVGLALIVSWVSCLKIGFELKKYNSITNLPNSCFVDSMIYASRCNLLLISSSDTWNSVYGFTFGYKDDKEAILGHAVCVFEYNNNLWMYDPNWGTSPVCQIGDRKQYKEKIKLHINKTYPIIVIEDFMLNDWTYVQKTKKNKMNKTYQEVSIHLDEYKKE*
Ga0114980_1000009768	F043789	N/A	MKKKLSKYEQLIANLNKASQDLKDASTKAIAILDAHANKVEAIHQEAMTK*
Ga0114980_1000009769	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMHALTKVALHSLVNKINAKGRKGGLLDLAKAKAQSIVDAMGQTCFLWGASSSEGYSLGTISAEKPSDYCGAVSNGRD*