Scaffold Ga0114980_10000056

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000056
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68573
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (9.38%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021755	Metagenome / Metatranscriptome	217	Y
F026824	Metagenome / Metatranscriptome	196	Y
F028487	Metagenome	191	Y
F034547	Metagenome / Metatranscriptome	174	Y
F036664	Metagenome	169	Y
F053807	Metagenome / Metatranscriptome	140	Y
F063690	Metagenome / Metatranscriptome	129	Y
F070891	Metagenome / Metatranscriptome	122	N
F088761	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000005610	F088761	N/A	MTKNYVINNGSFTANGNFSGYTALGERVHIFGRQMEALSWKSNADVTFPFYAIGQMKQINQLNEKGETIGTADRLTALSAFKSREEIKQAHADSTLLDIEIQQEIKAQASSAGLTESAINSLLSVAF*
Ga0114980_1000005613	F070891	N/A	MKQNNSLKTKEMKRLYEILFEGKKPEEQPLKLEIKLKSTATPQEHIDINTWYKLINDLNDKKLRLG*
Ga0114980_1000005615	F053807	N/A	MSYSLVFSAKPNCTHTIQVYEPNQQDSPYARSIKACSKLIDVIFAVKAHYTPSRRLHIKGRRYMYISSDEYKLIRFKNY*
Ga0114980_1000005631	F036664	N/A	MTIEDLKQAIQDHVEWFETTEGDDLECIGIENLEGILSEYFNTEIKLSLNGDV*
Ga0114980_1000005638	F021755	N/A	MKRQILKLHDKKYANLLDDRVKECILKNENYEIEYRGKTMILTSEDLKTKCLSRQYIEKPKYGEKPYHLLSYLWEPTKTTKDEKGTD*
Ga0114980_1000005642	F028487	N/A	MYNSDILNHLISKYGIDDVIKFCDMEREKNALLAQSVDEDKQHHPEPNEWRFERDWWAESGKQLKQRI*
Ga0114980_1000005657	F034547	N/A	MKSAKVSVKQAKSVKPMTAGKAKGSGTPRPAPKVAPPKPVDGNYMKEADTKLRLRSKNWPMKQKRLSK*
Ga0114980_1000005661	F063690	N/A	MASIKKPGPYNPQKASAYVGKGVLRNGDTLSPIKGSITPVPNGHLIKKDGTSLKNGGKTKAIVKAGGQTHKVFKKKVDKGIGDKGDIVVDHTAGPSAGKWDKINLTEKSKAKTVKQGVASVKKWHRENPNYGKKPLKKK*
Ga0114980_100000568	F026824	N/A	MEMILTLVGCIVGLLSVIVCIWGFTHFDEWEIGIEFLPKDYNNFELGVTNRNYELTDGGLEQELRIGVLLFTFLIIFRRFDA*