Scaffold Ga0114962_10069237

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10069237
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2265
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F026830	Metagenome / Metatranscriptome	196	Y
F056431	Metagenome / Metatranscriptome	137	N
F057100	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100692371	F057100	GGA	MYDNDKARVGHDDTDFAAYGLSYLRDQYGNRDDTVAPYTDKVNDAFIADVWRIMDQAGNLLVRKHHDYGPKNIAHSPGGPLNGLRVR
Ga0114962_100692373	F026830	AGGAG	MPVPEGNITTSEILVPEVVPVEEVIEEVEDDLPELS*
Ga0114962_100692375	F006653	AGGAGG	MSEQLSNKYRDNLRIDALREDINALRAEVDGIKVDLTNFVGALLQSGVVELVKDEEGNIIYKINKVVLVDESVQQD*
Ga0114962_100692376	F056431	N/A	PGQATLKVAAVKNRFGPHQPDGKKYAQLLVNYAAVQISDQNEFGWMLRRDAMSGYQGGINV*