Scaffold Ga0114962_10022530

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10022530
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4427
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034813	Metagenome	173	Y
F068426	Metagenome	124	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1002253010	F006060	AGGA	MNHFNKAVVGDIIRAFDFKPMAGRDDAFVEGIVEQTNCYEPGYNCFKITVTADKFQKYETKAKKENRVGRIVFVPHQVSFMEYDGRILNLSKE*
Ga0114962_100225302	F083691	GGAG	MSISAYKEITVWDKAEFKVPNHTYLFDGKSNILAYAKESNDELVILHKPLPLDNRRRKFIKVKHKALDAYGATIVLAPPPVANNINIFMVKSDSGKEYTVEKIDNKYSCNCIGFAYRGKCKHSEQVRNENE*
Ga0114962_100225305	F034813	AGGA	MSYDSDYESVYMVVFESGRTVHVSFYEVEDVIQYCEDEHIGEVIKTIYQEVYVGDDDDDGRC*
Ga0114962_100225308	F068426	AGGTGG	MSKWNFVIKELKSLQQGFEDHQAIVELFVEQILLKHYKVNK*