Scaffold Ga0114962_10008299

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10008299
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7830
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F011142	Metagenome / Metatranscriptome	294	Y
F035668	Metagenome / Metatranscriptome	171	Y
F043286	Metagenome	156	Y
F059759	Metagenome / Metatranscriptome	133	Y
F068428	Metagenome	124	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000829913	F059759	AGGA	MTKQQIWDLLEIYRQMQVANTMAMHSDAFEELHLFIEENCLNVKEEKNA*
Ga0114962_1000829915	F035668	N/A	MTCNKCIEGNCQCARVNSINIFGRDYKAGKSEGQQKEHSRTSEALIELERSGVITNAQMQAILDLILEKLTDALDID*
Ga0114962_1000829919	F068428	GAG	MLEDLALPKRTISCRVRTIKSELNDKDALILEQAVMNPEWPCKTLSNELNKRGTKLSDSAIKHHREKRCSCWKD*
Ga0114962_1000829922	F006985	N/A	MIREVCSCGAEFETDDREAIELIKSWRRTHKHSDKLQKPNERDSSALTNTDVALGFQAIYDPLDDDE*
Ga0114962_100082993	F043286	GGA	LQDNQVECRRCGFKWAVNAGKRGRKDLLCISCRVKPAVTIQYGKLRCTPHQGKIDADLNPVNDLGQLIFVGERICGHKDCVNESHILS*
Ga0114962_100082994	F011142	N/A	MAVVKVSGKVSKVFGASDQGLSLVESYKSATGEDYTRTWTVWFAVAHNLAVDSEVTLFGQLSAKIEDFEDKTGKPGRKVKLDINNAQVDKTVAPAVSAPF*
Ga0114962_100082997	F102815	GAGG	MQNSTGEELFLKAIEAYKAWIATGKDFLNHSDLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLEIIK*