Scaffold Ga0114962_10001717

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10001717
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18724
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F011483	Metagenome	290	Y
F022157	Metagenome	215	Y
F031035	Metagenome	183	Y
F042803	Metagenome	157	Y
F045609	Metagenome	152	Y
F062385	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000171710	F022157	GGAGG	MWDVAVTFMLMMFGAFIVVAFGAILIWVLYIVQNVD*
Ga0114962_1000171712	F011282	N/A	MRKIKNIVVITGTYINKDAQEKKRYQTIGSLFEDGDNLKIKLDTIPLVEGGWTGWANCYELEEKPRKAGFDDMDDRIPF*
Ga0114962_1000171717	F042803	GGAGG	MQDGDTGKFITYLIWDEVTVDWTWYEGEDWDVDGYFDIYVYKDGINVTYDIPKLHLQWIEEEVKEYAGYMPPTRQRIASAINGHFNKTF*
Ga0114962_1000171718	F005737	AGGA	MFEIEKYTKPTDWTAIAVYIVAIIALVVVALDIFVWRA*
Ga0114962_1000171723	F045609	GAGG	MDRNEANRLLDQHKETRQLSYADTTAALRATGDYEDNGGAGMDSEIPQESERPWENECFRLVAASLVRHREKAWVTRR*
Ga0114962_1000171728	F011483	AGG	MTYDLVNFLRAEIKELHSILNETQLSLAEANDRLNRRSEPLSEERIYTLYRRSLDWRQLARDVEADHDIE*
Ga0114962_100017175	F031035	GGAGG	MKELINARIQDLMVKGRELEQQIQQINGALQQCQWTLVELEKSDATQEIDHPESV*
Ga0114962_100017178	F062385	AGGA	MGYEMKKMIPDAGKADMSGEKKVSVPKMDREVATKSMTGATPPKGALSSDTSGERKRPIEGGVGMGKMDGIGLREASHMGMHDGRKGEMKGGSSEATCYEHKRMAHVQDSM*