Scaffold Ga0114962_10000734

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000734
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28607
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (74.51%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004305	Metagenome / Metatranscriptome	444	Y
F037702	Metagenome	167	Y
F046202	Metagenome	151	Y
F048114	Metagenome	148	Y
F056420	Metagenome	137	Y
F077007	Metagenome / Metatranscriptome	117	N
F078231	Metagenome	116	Y
F082122	Metagenome	113	Y
F083753	Metagenome	112	Y
F096599	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000073416	F048114	GGAGG	LNEEEKAIGEREYMYRCLVREVIKMRLKNRDSAYRWLRGYVDDTRRWKKGWNELHPESKLEDDVRDQWNKGNRGNAGEWK*
Ga0114962_1000073418	F078231	AGAAGG	MKTEPELIDIYAMFALMALMQKTTKTKSKIDTAYEAFEQAQAMIEVRADFIERKE*
Ga0114962_1000073420	F046202	AGGAGG	MFESFGDFFWTFMAMSGFMFWIFFAGFVALVIRRNRQKRGIYYEQR*
Ga0114962_1000073426	F096599	AGGA	MKKDIQVTICTDDDVRVSVDEWDNGSVWLHLQGRGASMNCTLTRPEAEQMLGALQAILAKEVTA*
Ga0114962_1000073427	F083753	GAGG	MKHTEAQYITLGYKYEKAKSPEAGQAAAQAIRSLMEDEAIDDRADARYLIERGRQEARGVTA*
Ga0114962_1000073430	F056420	AGGA	MSQVYKLEEHLMMLLVEDKLCFEEGDWERLDRIRLAIDDTRDQIAKAKGN*
Ga0114962_1000073439	F082122	GGAG	MREETLLEKVVIGIMFAAFIVFWVWVPDFTLDENDCAKQDASAYVGALCNKSQAK*
Ga0114962_1000073444	F004305	AGGAG	MENEVKEMQSEQVRLKARMAAGAWVTGESLKEESKATMPLANSDHGNFSQPKGIDKKNA*
Ga0114962_100007345	F037702	AGGAG	MLSEEEIRQVYFYCDEKLPNAIYADEVDIIQFAHKIAAYAEVAHARKEHARCVEIVSHMNPEVAKALETQRPK*
Ga0114962_100007348	F077007	N/A	MRLMRNQQATHVDFFQFRGLIETNPKATPCNIDMVFERKCKFFVGEWKREGEGMSQGQGLLLRNLARQPQFTVVIIQGNTDGDTVVEKFEQLCSDGRFRVRGKSFDDLKSFVTRWYNWADAQEFQ*