Scaffold Ga0114962_10000069

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000069
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78315
• Total Scaffold Genes: 127
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (66.93%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F008244	Metagenome / Metatranscriptome	336	Y
F019833	Metagenome	227	Y
F020009	Metagenome / Metatranscriptome	226	Y
F029752	Metagenome	187	Y
F041597	Metagenome	159	Y
F080043	Metagenome	115	Y
F084240	Metagenome	112	Y
F090402	Metagenome	108	Y
F092068	Metagenome	107	N
F095471	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_10000069109	F080043	AGG	MARKKIQPAEPTVVKGSHLTVTTFPDGRTELKWDWDALVNEVREACASVELANMKPAVKAKSKKSVAKTK*
Ga0114962_1000006911	F084240	AGGAG	MSWFKHKPRTKTPPKLHVYHTSPIAEKLLKETKLEVTGVKAKLAEVEKKKNER*
Ga0114962_1000006914	F020009	AGGAG	MIDLENMPAPTQEQIAEARENAFNAEHPASWTWNEEATSYVAPVSVPNDGYPYLWDEATTNWTPFPDYPRE*
Ga0114962_1000006915	F041597	N/A	MTISGGITVVYIPPPSNKAIFGYGVNNADSMVSITNLVSNTGVVATDTAGVGTGRRNLGGAGYGTDKAIFGYGQTSSLLFSLTNLVSNTGVVATDTAGVGTARSNLAAAGYGGDKAIFGYGANLNQDVMYSLTNLVSNTGVVATDTTGVGTSRFQLAAAGYGTDKAIFGYGYNSSFTPLSITNLISNTGVVGNDVTGVGTARTALAATGYGTDKAIFGYGYAGGVQSITNLVSNTGVVASNTTGVGTARYNLAAAGYGVDTAIFGYGVGPASPPYLSMTNLVSNTGIVATDTTGVGTARYGLAAASYGLS*
Ga0114962_1000006916	F001009	GAG	MASNLNSEFNYRYQVIGSTPWEKIKTLQGFYVGRKRAAVLEEVAELKYQAKLEELKHLKTVPALPHIMLNLQAEIIELESHLDDQKHAFELNRKEIKILEKYMAELYAEVEPTRLKHPDGTPYTDDEMFEANANYEFTVTVGREIQSEIIAMGRPSPAKLLNAMSNPQTLNSLMQIGLVPQGTILLEQKDIMLELTNQSTTTVMDAPKELESNTSKKKTKKK*
Ga0114962_1000006918	F095471	AGGA	MKYLLLAVSLGITNISYSQKLEQTIKAELPCYDTTELFKSLREKFKELPLLTGKADDEANSTMSLWLNPVDNNWTIIATKKELSCVVGAGTDMKIISTRKGTNV*
Ga0114962_1000006927	F090402	AGGA	MILINIGVVLFFGRLLATKDYTLNPKWMYYMDGIVFAVNFAIVFLYITDKLGV*
Ga0114962_1000006973	F008244	AGGAG	MFNTATYAFIDGVSDFKKKFVEQTVQHDGIKSAMITFVDAQSKYTKQAADAGMQSMMAMGMIFTSKDFYTEMSDQFKAMVPAFNTKKSK*
Ga0114962_1000006976	F092068	AGG	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKSPKPSKGFGGASVVRRTGRGG*
Ga0114962_1000006983	F029752	AGGAG	MSRDYNNLQYILNKTPEELQEWWYSLEDEDQAYAMEIIIEYRKMLDEPVVEDYNLAKEYLKKFQL*
Ga0114962_1000006994	F019833	AGG	MYELRYLVRSGWDGPEKVLQYRTQIEVTDYSTTTIQGSFTKKREYTEWQDVPTIEDK*