Scaffold Ga0114129_10021789

Overview

Basic Information

• Taxon OID: 3300009147
• Scaffold ID: Ga0114129_10021789
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9096
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008142	Metagenome / Metatranscriptome	338	Y
F057963	Metagenome / Metatranscriptome	135	Y
F075145	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114129_1002178910	F057963	N/A	MLKWRASAITGLIAGLALVSLPLEVTIELAEHPVIAPTPGVSLLLIGSCLLLVGSGVGLRREEASRAGARRPTPSA*
Ga0114129_1002178911	F075145	N/A	MLDSGGRARLLHVAIWLATLFFTAMLFVPLLREVLRRLTEPPPAGPF*
Ga0114129_1002178915	F008142	N/A	MLTLAWILWAHETAQVGEQFIDRGYTAIDSFETRQLCHAAMTDYAALKLVRQGKVRVEFSCLPERTNPRPPRSAVG*