Scaffold Ga0114129_10007636

Overview

Basic Information

• Taxon OID: 3300009147
• Scaffold ID: Ga0114129_10007636
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15387
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020576	Metagenome / Metatranscriptome	223	Y
F075811	Metagenome / Metatranscriptome	118	Y
F096814	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114129_1000763613	F075811	GGAGG	MPKRAVKPRRREDALVEFLFAAGAILVIVGLIYAIRRSWPALDPLSLVMLVGIGLLLVVVCERLRLILRELRELTTLIRVSTAQAPEEPSK*
Ga0114129_1000763614	F096814	GGAGG	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQRDRAS*
Ga0114129_100076369	F020576	GAGG	MRWVERLWRDDGRVKATPAGVAASLAAGVTRSTNLLRVRLEEQGLSRADRKRFESEACILECLLFEWFLRDIVVTLEFGRHTDTIQQALAKRLAADLDRSGLSPAVLLDFTRLRRERFPEYREAAAASISLQALGTLAWRRIADTDEPSDRMTMFLAMRATAGLQALRGLGKRYILITAPRSFFSAPSKE*