Metagenome / Metatranscriptome Family F096814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096814
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	57 residues
Representative Sequence	MKNIGIIAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRAS
Number of Associated Samples	91
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.73 %
% of genes near scaffold ends (potentially truncated)	19.23 %
% of genes from short scaffolds (< 2000 bps)	77.88 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment (10.577 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (34.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.47% β-sheet: 0.00% Coil/Unstructured: 43.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01478	Peptidase_A24	13.46
PF09925	DUF2157	1.92
PF09594	GT87	0.96
PF08241	Methyltransf_11	0.96
PF00535	Glycos_transf_2	0.96
PF09969	DUF2203	0.96
PF00482	T2SSF	0.96
PF07719	TPR_2	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	43.27 %
Unclassified	root	N/A	37.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	43.27 %
Unclassified	root	N/A	37.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %

Name	Rank	Taxonomy	Distribution
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	41.35 %
Unclassified	root	N/A	37.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	41.35 %
Unclassified	root	N/A	37.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.96 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	41.35 %
Unclassified	root	N/A	37.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	41.35 %
Unclassified	root	N/A	37.50 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8773405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	2821	Open in IMG/M
3300002122\|C687J26623_10187710	Not Available	572	Open in IMG/M
3300003994\|Ga0055435_10046633	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1032	Open in IMG/M
3300004009\|Ga0055437_10070787	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	977	Open in IMG/M
3300004009\|Ga0055437_10140115	Not Available	743	Open in IMG/M
3300004022\|Ga0055432_10175456	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300004052\|Ga0055490_10077135	Not Available	911	Open in IMG/M
3300004058\|Ga0055498_10058048	Not Available	701	Open in IMG/M
3300004114\|Ga0062593_100310137	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1351	Open in IMG/M
3300004114\|Ga0062593_102478288	Not Available	587	Open in IMG/M
3300004156\|Ga0062589_100017061	All Organisms → cellular organisms → Bacteria	3296	Open in IMG/M
3300004463\|Ga0063356_100367317	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300004463\|Ga0063356_100405517	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1755	Open in IMG/M
3300004463\|Ga0063356_101888086	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300005295\|Ga0065707_10020034	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300005295\|Ga0065707_10298118	Not Available	1010	Open in IMG/M
3300005334\|Ga0068869_101172949	Not Available	674	Open in IMG/M
3300005343\|Ga0070687_101370888	Not Available	527	Open in IMG/M
3300005434\|Ga0070709_10311680	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	1152	Open in IMG/M
3300005440\|Ga0070705_101101435	Not Available	650	Open in IMG/M
3300005444\|Ga0070694_100696246	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	826	Open in IMG/M
3300005445\|Ga0070708_100117190	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	2453	Open in IMG/M
3300005458\|Ga0070681_10715707	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	917	Open in IMG/M
3300005471\|Ga0070698_100017219	All Organisms → cellular organisms → Bacteria	7614	Open in IMG/M
3300005471\|Ga0070698_101753661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	573	Open in IMG/M
3300005563\|Ga0068855_100224630	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300005719\|Ga0068861_100298149	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1395	Open in IMG/M
3300005829\|Ga0074479_10552273	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300005875\|Ga0075293_1004233	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1414	Open in IMG/M
3300006845\|Ga0075421_100868636	All Organisms → cellular organisms → Bacteria → Acidobacteria	1032	Open in IMG/M
3300009038\|Ga0099829_10363769	Not Available	1192	Open in IMG/M
3300009089\|Ga0099828_11820795	Not Available	534	Open in IMG/M
3300009147\|Ga0114129_10007636	All Organisms → cellular organisms → Bacteria	15387	Open in IMG/M
3300009174\|Ga0105241_10357628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1270	Open in IMG/M
3300009174\|Ga0105241_11048313	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	765	Open in IMG/M
3300009177\|Ga0105248_11056766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	917	Open in IMG/M
3300009821\|Ga0105064_1073945	Not Available	676	Open in IMG/M
3300010371\|Ga0134125_12924930	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	518	Open in IMG/M
3300010391\|Ga0136847_10783597	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	958	Open in IMG/M
3300010396\|Ga0134126_11891453	Not Available	653	Open in IMG/M
3300010400\|Ga0134122_10087201	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	2452	Open in IMG/M
3300010403\|Ga0134123_11138325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	806	Open in IMG/M
3300012096\|Ga0137389_11212194	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	646	Open in IMG/M
3300012931\|Ga0153915_10300616	Not Available	1792	Open in IMG/M
3300012931\|Ga0153915_10585317	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1282	Open in IMG/M
3300013102\|Ga0157371_10909503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	668	Open in IMG/M
3300014324\|Ga0075352_1291697	Not Available	517	Open in IMG/M
3300014881\|Ga0180094_1022231	Not Available	1247	Open in IMG/M
3300014884\|Ga0180104_1030134	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1389	Open in IMG/M
3300015371\|Ga0132258_13165345	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1136	Open in IMG/M
3300017997\|Ga0184610_1027131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1582	Open in IMG/M
3300017997\|Ga0184610_1185975	Not Available	691	Open in IMG/M
3300018052\|Ga0184638_1180195	Not Available	751	Open in IMG/M
3300018053\|Ga0184626_10051029	Not Available	1731	Open in IMG/M
3300018056\|Ga0184623_10297529	Not Available	730	Open in IMG/M
3300018059\|Ga0184615_10020044	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	3680	Open in IMG/M
3300018063\|Ga0184637_10584451	Not Available	635	Open in IMG/M
3300018076\|Ga0184609_10039246	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1983	Open in IMG/M
3300018076\|Ga0184609_10088991	Not Available	1374	Open in IMG/M
3300018079\|Ga0184627_10222197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	997	Open in IMG/M
3300018084\|Ga0184629_10015198	All Organisms → cellular organisms → Bacteria	3080	Open in IMG/M
3300018422\|Ga0190265_10239175	Not Available	1856	Open in IMG/M
3300019249\|Ga0184648_1231219	Not Available	579	Open in IMG/M
3300019879\|Ga0193723_1012771	All Organisms → cellular organisms → Bacteria	2652	Open in IMG/M
3300020003\|Ga0193739_1017172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1886	Open in IMG/M
3300020063\|Ga0180118_1375672	Not Available	513	Open in IMG/M
3300020068\|Ga0184649_1521638	Not Available	1232	Open in IMG/M
3300020579\|Ga0210407_10060559	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	2834	Open in IMG/M
3300021051\|Ga0206224_1024232	Not Available	736	Open in IMG/M
3300021073\|Ga0210378_10045929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1723	Open in IMG/M
3300021090\|Ga0210377_10132773	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1638	Open in IMG/M
3300021559\|Ga0210409_10806986	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	811	Open in IMG/M
3300025165\|Ga0209108_10039041	All Organisms → cellular organisms → Bacteria	2661	Open in IMG/M
3300025324\|Ga0209640_10005980	All Organisms → cellular organisms → Bacteria	10645	Open in IMG/M
3300025324\|Ga0209640_10100057	All Organisms → cellular organisms → Bacteria	2500	Open in IMG/M
3300025535\|Ga0207423_1005027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1937	Open in IMG/M
3300025885\|Ga0207653_10060916	Not Available	1272	Open in IMG/M
3300025911\|Ga0207654_10464779	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	889	Open in IMG/M
3300025912\|Ga0207707_10129067	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2211	Open in IMG/M
3300025942\|Ga0207689_11324855	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300026005\|Ga0208285_1013710	Not Available	633	Open in IMG/M
3300026340\|Ga0257162_1051955	Not Available	521	Open in IMG/M
(restricted) 3300027799\|Ga0233416_10343629	Not Available	514	Open in IMG/M
3300027815\|Ga0209726_10051270	All Organisms → cellular organisms → Bacteria	2865	Open in IMG/M
3300027909\|Ga0209382_10337307	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1692	Open in IMG/M
3300028792\|Ga0307504_10330649	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	582	Open in IMG/M
3300030006\|Ga0299907_10872251	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	672	Open in IMG/M
3300030619\|Ga0268386_10195574	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1517	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10030882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1386	Open in IMG/M
3300031229\|Ga0299913_10500217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1202	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1021084	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1555	Open in IMG/M
3300031720\|Ga0307469_10860896	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	836	Open in IMG/M
3300031720\|Ga0307469_11501464	Not Available	645	Open in IMG/M
3300031820\|Ga0307473_10430679	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	873	Open in IMG/M
3300031949\|Ga0214473_10280109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1909	Open in IMG/M
3300032180\|Ga0307471_100018815	Not Available	4983	Open in IMG/M
3300032180\|Ga0307471_101225390	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	914	Open in IMG/M
3300034165\|Ga0364942_0031143	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1706	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.69%
Host-Associated	Host-Associated	17.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.88%
Aquatic	Environmental → Aquatic	29.81%
Plants	Host-Associated → Plants	17.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.96%
Sediment	Environmental → Aquatic → Sediment	13.46%
Freshwater	Environmental → Aquatic → Freshwater	9.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.65%
Marine	Environmental → Aquatic → Marine	6.73%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.46%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Sand	Environmental → Terrestrial → Soil → Sand	2.88%
Lake	Environmental → Aquatic → Freshwater → Lake	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.92%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.69%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.92%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.96%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.96%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026005	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027799 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01354170	2088090015	Soil	MKNIGITAIGVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLAVGFLLYRRGQGGQAN
JGI10214J12806_106780853	3300000891	Soil	EDIAMKNVGIAAIVVGIVVFVLGTAGVIGESGNLRTVTVGAIILLAVGFLLYRRGKSQVG
C687J26623_101877101	3300002122	Soil	MPCLKWNKTGEVQCPDPSRLQEGNAMKNVGIIAIAGGILVIILGLAGVLGQGGNLRIVMVAAIILLAAGFFLYRRGQTGRAS*
Ga0055435_100466332	3300003994	Natural And Restored Wetlands	MKNIGIAPIVTGILVIILGLAGVLGQRGQLRTVMVAAAILLVAGFLLYRRGQSGRAS*
Ga0055437_100707871	3300004009	Natural And Restored Wetlands	MKNIGIAAIVVGILILLLGLAGVIGQGGNVRSVIIGAVIILVVGLFLY
Ga0055437_101401153	3300004009	Natural And Restored Wetlands	AMKNIGIAPIVTGILVIILGLAGVLGQRGQLRTVMVAAAILLVAGFLLYRRGQSGRAS*
Ga0055432_101754561	3300004022	Natural And Restored Wetlands	MKNIGIAAIVVGILILLLGLAGVIGQGGNVRSVIIGAVIILVVGLYLYGRGRSGRAR*
Ga0055490_100771353	3300004052	Natural And Restored Wetlands	MKNIGITAIVAGILVIILGLAGVLGQGGNLRTVMVAVVILLVAGFLLYRRGQSGRAS*
Ga0055498_100580482	3300004058	Natural And Restored Wetlands	MKNVGIAAIVVGILVFVLGITGVIGPEGNLRTVTVGAIILLAVGFLLYRRGKSRLG*
Ga0062593_1003101373	3300004114	Soil	MKNIGITAIGVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLAVGFLLYRRGQGGQAN*
Ga0062593_1024782882	3300004114	Soil	MKNIGIAAIVVGVLVFVLAIMGVLGEGGNLRTVTVAAIVIVAIGFLLYRRGKGQLG*
Ga0062589_1000170611	3300004156	Soil	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRTS*
Ga0063356_1003673173	3300004463	Arabidopsis Thaliana Rhizosphere	MKNIGIAAIVAGIAVIILGLAGIIGQAGNFRTVMIGAVILLAVGFLLYRRGQRDRAI*
Ga0063356_1004055173	3300004463	Arabidopsis Thaliana Rhizosphere	MKKIGLAGIVAGILILVLGLAGVLGQGDNFRAVMIGAVILLAAGFLGYRRGQQGRAN*
Ga0063356_1018880861	3300004463	Arabidopsis Thaliana Rhizosphere	MKNIGIATIVAGIVVIILGLAGIIGQAGNFRTVMVGAVILLVVGFLLYRRGQRDRAV*
Ga0065705_104801573	3300005294	Switchgrass Rhizosphere	MKNVGIAAIVVGIVVFVLGTAGVIGESGNLRTVTVGAIILLAVGFLLYRRGKSQVG*
Ga0065707_100200343	3300005295	Switchgrass Rhizosphere	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRRSRSGRAS*
Ga0065707_102981184	3300005295	Switchgrass Rhizosphere	CRQEGNAMKNIGVMAIVAGVLVIIIGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRPS*
Ga0068869_1011729492	3300005334	Miscanthus Rhizosphere	MKNIGVMAIVAGVLVIIIGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRPS*
Ga0070687_1013708881	3300005343	Switchgrass Rhizosphere	GVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLAVGFLLYRRGQGGQAN*
Ga0070709_103116802	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAEPWEEPMKNIGIIAILAGIVVIILALAGVVGQGGSGRTVIVGAIILLVAGYLLYKRGQRPA*
Ga0070705_1011014351	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKNIGIIAILAGIVVIILALAGVVGQGGSGRTVIVGAIILLVAGYLLYKRGQRPA*
Ga0070694_1006962461	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKNIGIISIVAGILVIILGLTGVLGRGGDLRTVMVSAVILLAVGFLLYRRGQSGRAS*
Ga0070708_1001171902	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKNVGIIAILAGIVVIILALVGVLGQGGAGRTVMVGAVILLVVGYLLYKRGHRPSA*
Ga0070681_107157072	3300005458	Corn Rhizosphere	MKNIGIAAIVAGIVVIILALAGIIGLGGNFRTVMVGAVILLAVGFLLYRRGQRGQAT*
Ga0070698_1000172192	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKNVGVIAILAGIVVIILALVGVAGQGGAGRTVMVGAVILLVVGWFLYKRGQRPSP*
Ga0070698_1017536611	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MALREVHWMAEAWEVAMKNVGIIAILAGIVVIILALVGVVGQGGAGRTVMVGAVILL
Ga0070699_1008959721	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VKNVGIIAILAGIVVIILALVGVLGQGGAGRTVMVGAVILLVVG
Ga0068855_1002246302	3300005563	Corn Rhizosphere	MKNIGITAIGVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLALGFFLYRRGHGGPAN*
Ga0068861_1002981493	3300005719	Switchgrass Rhizosphere	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGF
Ga0074479_105522732	3300005829	Sediment (Intertidal)	MKRIGLSAIGAGILIIILGLAGLVGQGGSLRTVMLGAVIIIGVGLFLYRRGRSGRTT*
Ga0075293_10042332	3300005875	Rice Paddy Soil	MKKIGIIAIVAGVLVIILGLAGVLGQGGNLRTVMIAAVILLAAGFLLYRRGQGGRAS*
Ga0075421_1008686362	3300006845	Populus Rhizosphere	VKNIGIIVIVVGILVMILGLTGVLGQGGDLRTVMVSAVVLLAVGFPLYRRGQSRRAS*
Ga0099829_103637694	3300009038	Vadose Zone Soil	MKNIGIGAIVVGILVIILGLAGVLGQGGTLRTVMVSAVIFLIVGFFLYRRGQSGRAM*
Ga0099828_118207951	3300009089	Vadose Zone Soil	MKNIGIAAIVAGILVIILGLAGVLGQGGTLRTVMVSAVIFLIVGFFLYRRGQSGRAM*
Ga0114129_1000763614	3300009147	Populus Rhizosphere	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQRDRAS*
Ga0105241_103576282	3300009174	Corn Rhizosphere	MKNIGISAIGVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLAVGFLLYRRGQGGQAN*
Ga0105241_110483131	3300009174	Corn Rhizosphere	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFL
Ga0105248_110567663	3300009177	Switchgrass Rhizosphere	MKNIGITAIGVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLAVGFLLYRRGQGGKAN*
Ga0105064_10739452	3300009821	Groundwater Sand	MKNISILAIVAGILVIILSLAGVLGQEGNFRTVMVGAIVLLAIGFLLYRRGQRGRAS*
Ga0134125_129249301	3300010371	Terrestrial Soil	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRR
Ga0136847_107835972	3300010391	Freshwater Sediment	MKNIGIAAIVAGILAIILGLAGVLGQGGNLRTVMIGAVVLLIVGFFLYRRGQSGRAT*
Ga0134126_118914532	3300010396	Terrestrial Soil	MKNIGISAIGVGILAIVLGLGGVIGQGDNFRTVMVGAVVLLAVGFLLYRRGQGGQAN*
Ga0134122_100872012	3300010400	Terrestrial Soil	MKNIGISAIGVGILVIVLGLGGVIVQGENLRTVMVGAVVLLAVGFLLYRRGQGGQAN*
Ga0134123_111383252	3300010403	Terrestrial Soil	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRAS*
Ga0137389_112121941	3300012096	Vadose Zone Soil	MKNIGIAAIVAGILVIILGLAGMLGQGGTLRTVMVSAVIFLIVGF
Ga0153915_103006161	3300012931	Freshwater Wetlands	GIAAIVVGILVIILGLAGILGQGGNLRTVMVGAVILLIVGFFLYRRGPTGRAT*
Ga0153915_105853172	3300012931	Freshwater Wetlands	MKNIGIAAIVVGILVIILGLAGVLGQGGNLRTVMIGAVIVLIVGFFLYRRGQSGRAM*
Ga0157371_109095032	3300013102	Corn Rhizosphere	MKNIGITAIGVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLA
Ga0157372_111073592	3300013307	Corn Rhizosphere	MKNIGIAAIVVGVLVFVRAIMGVLGEGGNLRTVTVAAIVIVAIGFLLYRRGKGQLG*
Ga0075352_12916971	3300014324	Natural And Restored Wetlands	MKRIGLSAIGAGILIIILGLAGLVGQGGSLRAVMLGAVIIIGVGLFLYRRGRSGRTT*
Ga0180094_10222311	3300014881	Soil	MKNIGIAAIGAGILVIILGLAGVLGQGGNLRAVMVGSVLLLIVGFFLYRRGQSGRAT*
Ga0180104_10301341	3300014884	Soil	MKNIGIAAFVAGILVIILGLAGVLGQGGNLRTVMVGAVLLLVVGVFLYRRGQSGRAT
Ga0132258_131653453	3300015371	Arabidopsis Rhizosphere	MKKIGIIAIVAGVLVIILGLAGVLGQGGNLRTVMIAAVILLAAGFLLYRRGQSGRAS*
Ga0184610_10271313	3300017997	Groundwater Sediment	MKNIGIIAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGPSGSAS
Ga0184610_11859752	3300017997	Groundwater Sediment	MKNIGIIAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRAS
Ga0184638_11801952	3300018052	Groundwater Sediment	MKNIGIIAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRRGQSGRAS
Ga0184626_100510293	3300018053	Groundwater Sediment	NAMKNIGIIAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRAS
Ga0184623_102975292	3300018056	Groundwater Sediment	MKNIGIIAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRASRS
Ga0184615_100200443	3300018059	Groundwater Sediment	MKNIGITAIVVGILVIILGLAGVLGQGGNLRSVMVGAVILLVVGFFLYRRGQSGRAM
Ga0184637_105844512	3300018063	Groundwater Sediment	MKNIGITAIVAGILVIILGLAGVLGQGGNFRTVMVGAVILLAVGFLLYRRGQSGRTS
Ga0184609_100392462	3300018076	Groundwater Sediment	MKNIGIIAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRASRP
Ga0184609_100889914	3300018076	Groundwater Sediment	AIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRRGQSGRAS
Ga0184627_102221972	3300018079	Groundwater Sediment	MKNIGITAIVAGILVIILGLAGVLGQGGNFRTVMVGAAILLVVGVFLYRRGQSGRAK
Ga0184629_100151984	3300018084	Groundwater Sediment	MKNIGIAAIIVGILVIILGLAGVLGQEGNLRTVMIGAVVLLIVGFFLYRRGQSGRAT
Ga0190265_102391752	3300018422	Soil	MKNIGIIAIVIGILVMILGLTGVLGQGGDLRTVMVSAVVLLAVGFLLYRRGQSRRAS
Ga0184648_12312191	3300019249	Groundwater Sediment	PAPSRLQEGNAMKNIGIAAIVVGILVIILGLAGVLGPEGNLRTVIVGAVVLLIVGFFLYRRGQSGRAT
Ga0193723_10127711	3300019879	Soil	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRRGRSGRAS
Ga0193739_10171724	3300020003	Soil	MKNIGIIAIVAGMVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRASRP
Ga0180118_13756721	3300020063	Groundwater Sediment	EGNAMKNIGIAAIVAGILVIILGLAGVLGQGGNLRAVMVGAVLLLIVGFFLYRRGQSGRA
Ga0184649_15216384	3300020068	Groundwater Sediment	MKNIGITAIVVGILVIILGLAGVLGQGGNLRTVMVGAVILLVVGFFLYRRGQSGRAM
Ga0210407_100605593	3300020579	Soil	MKNIGIIAILAGIVVIILALAGVVGQGGSGRTVIVGAIILLVAGYLLYKRGQRPA
Ga0206224_10242321	3300021051	Deep Subsurface Sediment	QEGNAMKNIGIAAIVAGILVIILGLAGVLGQGGNLRGVMVGAVVLLIVGFFLYRRGQSGRAT
Ga0210378_100459294	3300021073	Groundwater Sediment	MKNIGIGAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRASRP
Ga0210377_101327733	3300021090	Groundwater Sediment	MKNIGITAIIVGILVIILGLAGVLGQGGNLRTVMIGAVILLIVGFFLYRRGQSGRAM
Ga0210409_108069861	3300021559	Soil	MAEPWEEPMKNIGIIAILAGIVVIILALAGVVGQGGSGRTVIVGAIILLVAGYLLYKRGQ
Ga0242660_11946862	3300022531	Soil	GRRGTLFEAEPWEEPMKNIGIIAILAGIVVIILALAGVVGQGGSGRTVIVGAIILLVAGYLLYKRGQRPA
Ga0209108_100390413	3300025165	Soil	MPCLKWNKTGEVQCPDPSRLQEGNAMKNVGIIAIAGGILVIILGLAGVLGQGGNLRIVMVAAIILLAAGFFLYRRGQTGRAS
Ga0209640_100059803	3300025324	Soil	MKNVGIIAIAGGILVIILGLAGVLGQGGNLRIVMVAAIILLAAGFFLYRRGQTGRAS
Ga0209640_101000576	3300025324	Soil	MKNIGITAIVVGILVIILGLAGVLGQGGNGRTVMVGAVLLLIVGFFLYRRGQSGRAM
Ga0207423_10050273	3300025535	Natural And Restored Wetlands	MKNIGIAPIVTGILVIILGLAGVLGQRGQLRTVMVAAAILLVAGFLLYRRGQSGRAS
Ga0207653_100609163	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFLLYRRGQSGRTS
Ga0207654_104647792	3300025911	Corn Rhizosphere	MKNIGISAIGVGILVIVLGLGGVIGQGDNFRTVMVGAVVLLAVGFLLYRRGQGGQAN
Ga0207707_101290673	3300025912	Corn Rhizosphere	MKNVGIAAIVVGIVVFVLGTAGVIGESGNLRTVTVGAIILLAVGFLLYRRGKSQVG
Ga0207689_113248551	3300025942	Miscanthus Rhizosphere	PYVQEGTMKNIGIAAIVAGIVVIILALAGIIGLGGNFRTVMVGAVILLAVGFLLYRRGQRGQAT
Ga0208285_10137102	3300026005	Rice Paddy Soil	MKKIGIIAIVAGVLVIILGLAGVLGQGGNLRTVMIAAVILLAAGFLLYRRGQGGRAS
Ga0257162_10519552	3300026340	Soil	MKNVGIIAILAGIVVIILEFVGVLGQGGSGRTVMVGAVILLAVGWLLYKRGQRPSA
Ga0209966_10027242	3300027695	Arabidopsis Thaliana Rhizosphere	MKNIGIAAIVVGVLVFVLAIMGVLGEGGNLRTVTVAAIVIVAIGFLLYRRGKGQLG
(restricted) Ga0233416_103436291	3300027799	Sediment	MKNVGIGAIAAGILVILLALAGVLGQDGNFRTVMVGAVVLLAMGFLLYRRGQGGRGS
Ga0209726_100512704	3300027815	Groundwater	MKNIGITAIVAGILVIVLGLAGVLGQGGNLLTVTVAAVILLAVGFLLYRRGRSGRAT
Ga0209382_103373072	3300027909	Populus Rhizosphere	VKNIGIIVIVVGILVMILGLTGVLGQGGDLRTVMVSAVVLLAVGFPLYRRGQSRRAS
Ga0307504_103306492	3300028792	Soil	MKNIGIIAIVAGVLVIVLGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRRGRSGRAS
Ga0299907_108722512	3300030006	Soil	MKNIGIVAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRR
Ga0268386_101955742	3300030619	Soil	MKNIGIVAIIAGILVIILGLAGVLGQEGNLRAVMIAAVILLAGGFFLYRRGQTGRSS
(restricted) Ga0255310_100308824	3300031197	Sandy Soil	MKNIGVVAIVAGILVIILGLAGVLGHGGNLRTVMIAAVILLAAGFLLYRRGQSRRAP
Ga0299913_105002172	3300031229	Soil	MKYIGIVAIVAGILVIILGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRRGQSGRAS
(restricted) Ga0255312_10210842	3300031248	Sandy Soil	MKNIGITAIVAGILVIILGLAGVLGQGGNLRTVMVAAVILLVAGFLLYRRGQSGRAS
Ga0307469_108608962	3300031720	Hardwood Forest Soil	MKNIGIIAIVAGVLVIILGLAGVLGQGGNVRTVMVGAVILLAVGFFLYRRGGSGRAS
Ga0307469_115014642	3300031720	Hardwood Forest Soil	MKNVGIIAILAGIVVIILALVGVLGQGGAGRTVMVGAVILLVVGYLLYKRGQRPSA
Ga0307473_104306791	3300031820	Hardwood Forest Soil	MKNVGIIAILAGIVVIILALVGVLGQGGAGRTVMVGAVILLVVGYLLYKRGHRPSA
Ga0214473_102801094	3300031949	Soil	MKNIGITAIAAGILVIILGLAGVLGQGGNLRTVMVAAVILLAVGFFLYRRGQSGRTS
Ga0307471_1000188152	3300032180	Hardwood Forest Soil	VKNVGIIAILAGIVVIILALVGVLGQGGAGRTVMVGAVILLVVGYLLYKRGQRPSA
Ga0307471_1012253902	3300032180	Hardwood Forest Soil	MKNIGIIAILAGIVVVILALVGVVGQGGTGRTVMVGAVILLFIGYLLYKRGQRPSA
Ga0364942_0031143_1366_1536	3300034165	Sediment	MKNVGIIAILAGIVVIILALVGVVGQGGGGRTVMVGAVILLVVGYLLYKRGQRPSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters