Basic Information | |
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Taxon OID | 3300009137 Open in IMG/M |
Scaffold ID | Ga0066709_100942616 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1260 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001935 | Metagenome / Metatranscriptome | 615 | Y |
F002111 | Metagenome / Metatranscriptome | 592 | Y |
F094845 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066709_1009426161 | F001935 | N/A | LSYAAFLAVVIAAVFRILPGKAPPLRREPYSQDGLGRHDRKLAKYFGGGGAFLLLGSLHMVVKNLPWTAEWLARAGYAGHLVRDLSNTHLMIVGGGTLI |
Ga0066709_1009426163 | F002111 | AGAAG | MVAALPFVAYSSATEALVPAAQWEDLYASLQSLKAHVQEYPGCQRFDVFVRAEDTGDMRIHCYTTWDTPVQLEAFLERGYTFERLLADFGGLAAKESLVMEKIF* |
Ga0066709_1009426164 | F094845 | GAG | MAVSAMPTGDSPATAEKYYLYLQGHHESDGRVVTWHVDWFSLAWLWGFVIAMILVILLWVWQYRTTRQRPGIYPVDRFGGFTSELAGPATRFFILLTVLLTGFAVAIIVGHLVWGQKF* |
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