Scaffold Ga0066709_100003018

Overview

Basic Information

• Taxon OID: 3300009137
• Scaffold ID: Ga0066709_100003018
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12681
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001899	Metagenome	620	Y
F042270	Metagenome	158	Y
F072171	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066709_10000301812	F072171	GGCGG	VADTSSPGLARSPGYERPAQNASGEDRKFADEKAFASLLTDTVVESMADILGENVLSLLISKGMLDHAENPGELERQLALTFGNGSVALERMIVKALYRKLGIRLDSSFGFDYAKALDVARNVFGETRRKWKNVLD*
Ga0066709_1000030182	F001899	AGGGGG	VTVTCGFRFEVRREDEVVELRADHHTARVCESCLVLLTVHRRVHRMKVEKVIAAMAEPVPLVAEV*
Ga0066709_1000030188	F042270	GAGG	MTKNKTREGPLPPPDRGVNDARPGLPTPTVRKDVTWVQPEPITSDVTRPQQLSPDTKWAEPSVVKSKPAKGSPGLSTTRDQKEE*