Scaffold Ga0118729_1002571

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1002571
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19508
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (65.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F028524	Metagenome / Metatranscriptome	191	Y
F047373	Metagenome	150	Y
F059941	Metagenome	133	Y
F081210	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_100257123	F047373	GGAGG	MITNQKIEAGDVEYSRLSEVLRFTVAANIEAIRMMEDICGRTDMSIEELAHEMAQLLQQAITTNYHRGGHRRKYD*
Ga0118729_100257128	F005620	AGGA	MTQDETFTKQIETFKTFCKNNRLRLKEDGDGLPVARAIGKFKDDQFFCNFKDGTIGVYVTRETQRQFTYLNKKLVKLGCVPIQLGDFEASYDLEWMNIPPVAKLLKIKKGAAKVKDPKWLRENG*
Ga0118729_100257130	F014071	GGA	MSTTRPGRLIDKTFTSFTEASGRLEDTIGWVTKAKDLAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFGSEGTP*
Ga0118729_100257132	F028524	AGG	MTTTNNDFESTVKEFVNKLTTIENEMTILRQDRSELFGDMKEKLDPRSFRAAIKIHNLQKSTPDQTSLTRILEVLETTE*
Ga0118729_100257144	F059941	GAGG	MKLGTLVQFAAYGAVMDTGYVSKYDDEPGWIWVDCVKMGPQLVREDSKMMEVVSESR*
Ga0118729_100257146	F081210	GGAGG	VRPGDLVKQAPNIFADRKVAGKKMLVLKVMDGGPNRGETVLTLLEGTERVWHYGELELW