Scaffold Ga0118728_1038175

Overview

Basic Information

• Taxon OID: 3300009129
• Scaffold ID: Ga0118728_1038175
• Source Dataset Name: Combined Assembly of Gp0139513, Gp0139514
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2663
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022282	Metagenome	215	Y
F081210	Metagenome	114	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_10381751	F081210	N/A	PNIFTDRKVGGKKMLVLKVMEGGPNRGETVLTLLEGKERVWHYGELELWRETR*
Ga0118728_10381753	F022282	GGA	VNPSFRYQLGDLVEFKKSQRMTEEYIDLVTLRGIVVEQRYVFTADNKFKVRTPDQDYWIRADHLTLLSSGTKNKA*
Ga0118728_10381756	F105878	GGAG	VKVGQIIKINKSGLPQFAPAIRARIEGEIGLVVQEKYELSHKLDQDKLPERVRIYPSLVRFQSLQDLNFLDMGAIMVFADQAEVLS*