Scaffold Ga0118674_1027130

Overview

Basic Information

• Taxon OID: 3300009122
• Scaffold ID: Ga0118674_1027130
• Source Dataset Name: Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C13.But.B IBDA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1504
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location

• Location Name: Seattle, WA
• Coordinates
  • Lat. (^o): 47.652555
  • Long. (^o): -122.304991

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022442	Metagenome / Metatranscriptome	214	Y
F033483	Metagenome / Metatranscriptome	177	Y
F078878	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118674_10271301	F078878	AGGAGG	LSSIVLKIPYESQSFHAALTDATLRDRVQEWVAAAVTLDDAIYIPLRTDWMPNGTRRTADGVEVLLAGRWPPEIDAETGPRVSAAIFGRVWEIVCDAAPTEENKDVATCGLSGVNEEQTENETPEEAPVVIHAHATPVNHVDGWPWSRVVTEIRQWADIYPDPLPDPNDISEAEARALLKTIYQHPAVIAEFERRRMVAEATQREYRDARTIQYAIDVGVDLPDPTPPPLMQEFSC
Ga0118674_10271303	F033483	GGAGG	VTPGDASVTLDIGGLPVVLVLPERDVELMMWPYRANRILQEGRRR*
Ga0118674_10271304	F022442	AGGAG	VLVTFLPAGEARLDLYTDALILDIGRDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGTFRDVEQGIRLRRSQTDRSLMLIEQGRVYSIPVYLVLEVKDGIRESCTISMLVTDARQLDDAHSRQTVLEVRA*