 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009108 Open in IMG/M |
| Scaffold ID | Ga0117920_1008910 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate a |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6356 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (57.14%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 234 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005547 | Metagenome | 397 | Y |
| F010950 | Metagenome | 297 | Y |
| F053549 | Metagenome | 141 | Y |
| F057769 | Metagenome / Metatranscriptome | 136 | Y |
| F067640 | Metagenome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0117920_100891012 | F010950 | GGAG | MMNIWVVRQTFVQDGDSWVTTHLTEKGALMTAIDIVRDDLADGFDEDELEDYRPGMPHDPHENLKQYGKEQLRGIVQDWWEYSFDMNDCVQYQIHETQVMG* |
| Ga0117920_100891013 | F005547 | AGG | MKVWVMQGSYEGELFSSVHLTQKGCALACISDLMDFHGIDDDETALAVMHNSYAFTAAEKERQEATEPIEWDQEKLKDMTSEQLWKIFSDWCEMSWDRMSDRGYNIDACKMEIQG* |
| Ga0117920_100891014 | F057769 | GAGG | MTIEVGSIVESIGWVFGFNKSNHGLVIDMMADGKIARVFWMATQKSGFCSVVDLKVIA* |
| Ga0117920_100891015 | F067640 | N/A | MYRRERNMIEVGSLLRMWGNHSTWIALDEIADTVLVVSQKTNHKMWANKASFEVIA* |
| Ga0117920_10089104 | F053549 | GGTGG | MKVGDLVKWVTVLNDDMDRYQEELGLVIKMSRTGHNTESAQVLFNDGETWWVDTQRLVVINESR* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |