Scaffold Ga0117920_1003965

Overview

Basic Information

• Taxon OID: 3300009108
• Scaffold ID: Ga0117920_1003965
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10805
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022282	Metagenome	215	Y
F026042	Metagenome	199	Y
F081210	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117920_100396512	F022282	N/A	MSNPFRYQLGDLVEFEEARVMDTLEYTCDAVLTGIVIKQRYVFTADNRFLVRTPHTDYWVGADKLKLISKGTK*
Ga0117920_100396513	F006867	GAGG	MIKEIQKRCPIQPGMLIKSTAGTELGKLALVVGLSPSCEFKRDYEGAEDHIFYKCEPFDGTPPFVDYVCNMEKVS*
Ga0117920_100396517	F015346	N/A	MNPEYKSYKIGELVGVASNNVLGVITRSNYWALDEYLGGEIQFVDVLFGSSVSRQYPVDYLVKVS*
Ga0117920_100396528	F026042	AGAAG	LTFDVLKLLEQEGYIKDGEDNILHAEKAFFAARVMQWIRDKVQTDPDFNLTAYLKMLMYYKTDLADLKFTEDGSKLVYRMRNNDKEVQDIVNSLIKSTSKSRQESPPKENGEESTNTTEGADGTRDP*
Ga0117920_10039659	F081210	GGAG	MKPGDLVRQAPNIFADREVAGKKMLVLKVMDGGPNRGETVLTLLEGKERIWHYGELELWRETR*