Scaffold Ga0117920_1002160

Overview

Basic Information

• Taxon OID: 3300009108
• Scaffold ID: Ga0117920_1002160
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15719
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (68.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022523	Metagenome	214	Y
F026159	Metagenome	199	Y
F063091	Metagenome	130	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117920_100216019	F026159	GAGG	MKKFNTIEVVTFVGILTCLVLLLTAGCSMKLARNSAADVRKCCDRVSAHTKEMDKFNRYCKVALFLANSENKKEVGSGVRKGARDAVNICKFVFDVETDEDLLAAGDEQDYYKVRSYIIKSPDGNGGWIHPQCDPADMHCEEF*
Ga0117920_100216026	F022523	AGG	MKIGDLVEFTYGRVGGQIEGIGIFAEQGYYGKHKILFMNKAYWVPESCIKVISMKRKDPANEPLLN*
Ga0117920_100216029	F101067	N/A	MRVPTLDLHGLKHHEVQNVVARFIEDWLAKDLFVDIVTGNSEQMLFEAVKVIQQYGLQYNTGLPYHQGRIRVVMYDEYH*
Ga0117920_100216031	F063091	AGGA	MYKSLILLVFANLFNQAYNLEQIQCPKWVPGTDQVLPQGVSLSPELELKNRVRCYCEVVKTKEAQCLARHVPATICKARTRIWVENNLKLKDSFQLVNGVSPLPQRDRMINVEP*