Scaffold Ga0111539_10109082

Overview

Basic Information

• Taxon OID: 3300009094
• Scaffold ID: Ga0111539_10109082
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3248
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004391	Metagenome / Metatranscriptome	440	Y
F090027	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_101090821	F004391	GGAG	LLYEDETILWRFALPRAGWWRTAQRARLPIRPLSQSQITREESLKRQAWRGYRSWSRVTSGVLLSVIGAVQYGTSKVFYKIVPHFDAQEFRQYMHQVMATFSKIGKEVVM
Ga0111539_101090822	F090027	N/A	LGREGAVLQGVLINEALEVLFQRTGDFGRSTRAWAVDEAWRALVGKAMDPLAQRGIGKGQGVGDGLEALAFDHVAHGLGTAEDASLFGLFQEGV*