Scaffold Ga0102814_10252173

Overview

Basic Information

• Taxon OID: 3300009079
• Scaffold ID: Ga0102814_10252173
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 960
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Henriciella → unclassified Henriciella → Henriciella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014373	Metagenome / Metatranscriptome	263	N
F079927	Metagenome	115	N
F105152	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102814_102521731	F079927	N/A	DEKYLTMYQYYKQLTDYERGEYDALHSYPFDESEESNKDYTEGYRTGYEYAQRMGAKDNE
Ga0102814_102521732	F105152	GGAG	MSREYCRIDDDPSYDFSDYEDNTGYYTPYDDREVDYDPIDKVEMRERLKEVKQRRGITK*
Ga0102814_102521734	F014373	AGGAG	MSRCKACEVILTEAELRKKDRVTDEYLDLCSMCHSASDEAIEENWSLAEETGIIRSNN*