Scaffold Ga0115566_10213994

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10213994
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1170
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024562	Metagenome / Metatranscriptome	205	N
F044809	Metagenome / Metatranscriptome	154	Y
F058695	Metagenome	134	Y
F086185	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_102139941	F044809	AGGTGG	MPTAKQSWLNKYQTYYAQTEYNKEHYGKRIKQLQAMLE
Ga0115566_102139942	F086185	GGAG	MEPDMITLDDLLEILSTDLTPTEIEAFLFEWGVA*
Ga0115566_102139943	F024562	GAGG	MAIIYEKNFTDPNEKIVRQFTNCCGASDKGTEFGVVCRGCYDPIEGYVTDGDDSPKEFENYIHNDSVLKRFRTFVNENFLNYEQWHEHIINKMGV*
Ga0115566_102139945	F058695	N/A	GKTYVNSAQCTLNELQNQVTELKQGLEQGKNFSLLGENV*