Scaffold Ga0115566_10042858

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10042858
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3127
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010615	Metagenome / Metatranscriptome	301	Y
F037475	Metagenome	168	Y
F055556	Metagenome / Metatranscriptome	138	N
F060720	Metagenome	132	N
F085166	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_100428582	F085166	N/A	MTEEIEKEEEVLKRTADEVLHFIAEQQLRFIWVKPMIPEAKESTLGQDTLIIIDQNNIELFAGRYFADSEQRIDVLREGVEFIMDQEEL*
Ga0115566_100428583	F055556	N/A	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0115566_100428585	F010615	N/A	MQTIQLEGIELRPDKYFDITVEAEAVTTQCESSSEAGESQVTEAWEERDLDGFEIVSLVYWPNEDTPVDLPTIVLTHDDRATIYEETLRYI*
Ga0115566_100428587	F060720	N/A	MKNTQQSLNIEDRYWEVDFFADKLRRAGELIAEESITQDFCKEMQEEAIAALKAIYERASAHRDYLKEIRDSVEAEEDRELTRIQEAAVKRLNKGIKELANKLNK*
Ga0115566_100428588	F037475	N/A	MKAIETKYLAATDTRGSRIKATAGNMSATVPYNHALSHEAVFFEAVKELVKKNSLDWDISEMVFGGTKDGYVFCFPEATITA*