Scaffold Ga0115566_10026460

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10026460
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4168
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F092711	Metagenome	107	N
F098057	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_100264602	F092711	GGAG	MVQLEITLTGRSKSFTRDTLQDCAKQFFDEYGEAIKEVVKCHTFETNDPTQFMSIGGNESCVAWLKQMQQGAIDDK*
Ga0115566_100264603	F020603	AGGAG	MINKLLIIIFCLFLTNCSTYKPLINPETSKDKHNGDVIAGNYWKDLQACRYIHSQNTGIIIKTLGISDQTVFVKKCMEDYGYSILR*
Ga0115566_100264604	F028622	N/A	MLDEDKTYENEVVPISDDRGSLDLTRQIDELNKKVKNLDGLEKIHRQTNGDLRIHILKLDKKIYELKKNMAIEKENHQIEIMEKDNEIGRLIKKITEK*
Ga0115566_100264608	F098057	AGGAG	MTLDQILKLQSIVDKRAIRSDTLEFLNQTRYSDSKKANIRFGDMHIDHFLTVVSNDFININNNEEKEKSFHEMLEKVKKKIIKEFSHGNH*