Scaffold Ga0115566_10001584

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10001584
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19347
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F022282	Metagenome	215	Y
F047373	Metagenome	150	Y
F054842	Metagenome	139	Y
F060430	Metagenome	133	Y
F084852	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1000158411	F054842	AGGCGG	MGNEWRKKLKVGDLVKMKTGGMAILTEVFFRFPETNPSYPHIEMIYCDDNTPGSCSAWRVEELLNEAG*
Ga0115566_1000158423	F084852	GAGG	MRDLKRFEEDIQNILDKFQFEGETRRKIFSQLMEYASEQDKFNAEQQAGNPKKGNQNE*
Ga0115566_1000158424	F014071	AGGAG	MATRPGRLLDKTFTSFTEASGRLEDTIGWITAAEELANEVQPGCKAEVTLHLLGKVLEKARTELDQASEDLAIEVFGK*
Ga0115566_1000158426	F005620	AGGA	MTQEEKFTKQIETFKTFCKNNRLRLKEDGDGLPVARAIGKFNGDQFFCNFKDGSIGVYVTRETQRQFTYLNKKLVKLGCTPSQLGDFEASYDLEWMNIPPVAKLLKIKKGAAKVKDPKWLRA*
Ga0115566_1000158430	F047373	GGAGG	MIKNQKIDVGDVTYSPLSQVLRFTVAANSEAIKTMEDIVGRTDMSMEEVAKEMGRVLEQAIYTGYTRGGIRRRFD*
Ga0115566_1000158443	F060430	GGA	MIACIITAIVFSMPTVYYRIKLQEAQKKLDQHIETRWHWENWGE*
Ga0115566_100015846	F022282	GGAGG	MPKFHFRYDLGDLVEFKRTTRVTEEYTDVETLAGIIVEQRYVFTADNKFKVRTLDKDYWIRADHLKLLSSANK*