Scaffold Ga0114973_10249996

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10249996
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 956
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F024784	Metagenome	204	Y
F068573	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_102499962	F003066	GGTGG	MKTPLAFLYEEYDVRSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGEPVEEYKGLSKYDSKRLVEANNGL*
Ga0114973_102499963	F068573	AGTAG	MDSKPLTQEEIMKAYGKVFPTRYEPMTIERMIQFARIIEQLHGVKDVH*
Ga0114973_102499964	F011384	GGAG	MYTKLDDQRQAKFIIDYINKHPNCSIKNIVQQCATNRTRLKYLESQGYFSLPKWTYNNELDKRFKNRKYVSVTVGREYGKWT*
Ga0114973_102499965	F024784	GGAG	MDLAEKILDIVIWMLIVGGMFWFAYGCYELVDLFFIRG*